5VDU	Transferase	date	Apr 03, 2017
title	Human Cyclic Gmp-Amp Synthase (Cgas) In Complex With Compoun
authors	L.J.Byrnes, J.D.Hall
compound		source
Molecule: Cyclic Gmp-Amp Synthase Chain: A, B Fragment: Unp Residues 161-521 Synonym: H-Cgas,2'3'-Cgamp Synthase,Mab-21 Domain-Containin 1; Ec: 2.7.7.86 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mb21d1, C6orf150 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.222 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 216.415 48.019 86.466 90.00 104.94 90.00
method	X-Ray Diffraction	resolution	2.73 Å
ligand	9BS, ZN	enzyme	Transferase E.C.2.7.7.86 BRENDA
Primary reference	The catalytic mechanism of cyclic gmp-amp synthase (cGAS) and implications for innate immunity and inhibition., Hall J, Ralph EC, Shanker S, Wang H, Byrnes LJ, Horst R, Wong J, Brault A, Dumlao D, Smith JF, Dakin LA, Schmitt DC, Trujillo J, Vincent F, Griffor M, Aulabaugh AE, Protein Sci. 2017 Sep 22. doi: 10.1002/pro.3304. PMID:28940468

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk] Biological Unit Coordinates (5vdu.pdb1.gz) 118 Kb Biological Unit Coordinates (5vdu.pdb2.gz) 119 Kb LPC: Ligand-Protein Contacts for 5VDU CSU: Contacts of Structural Units for 5VDU Structure Factors (969 Kb) Retrieve 5VDU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VDU from S2C, [Save to disk]

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VDU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vdu_B] [5vdu_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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