5VHB Transferase date Apr 12, 2017
title Crystal Structure Of Protein Kinase A In Complex With The Pk And Aminobenzothiazole Based Inhibitor
authors R.A.Judge
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: A
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
Mutation: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Prkaca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)T1r

Molecule: Pki Peptide
Chain: B
Fragment: Unp Residues 6-23
Synonym: Pki-Alpha
Engineered: Yes

Synthetic: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.304 75.981 80.131 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.61 Å
ligand 9CY, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDesign of Aminobenzothiazole Inhibitors of Rho Kinases 1 and 2 by Using Protein Kinase A as a Structure Surrogate., Judge RA, Scott VE, Simler GH, Pratt SD, Namovic MT, Putman CB, Aguirre A, Stoll VS, Mamo M, Swann SI, Hobson AD, Chembiochem. 2018 Jan 4. doi: 10.1002/cbic.201700547. PMID:29314498
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5vhb.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 5VHB
  • CSU: Contacts of Structural Units for 5VHB
  • Structure Factors (1891 Kb)
  • Retrieve 5VHB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VHB from S2C, [Save to disk]
  • View 5VHB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VHB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vhb_B] [5vhb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VHB
  • Community annotation for 5VHB at PDBWiki (http://pdbwiki.org)

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