5VNQ Hydrolase date May 01, 2017
title Neutron Crystallographic Structure Of Perdeuterated T4 Lysoz Cysteine-Free Pseudo-Wild Type At Cryogenic Temperature
authors L.Li, S.Shukla, F.Meilleur, R.F.Standaert, J.Pierce, D.A.A.Myles,
compound source
Molecule: Endolysin
Chain: A
Synonym: Lysis Protein,Lysozyme,Muramidase
Ec: 3.2.1.17
Engineered: Yes
 Organism_scientific: Enterobacteria Phage T4
Organism_taxid: 10665
Gene: E, T4tp126
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.242 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.500 61.500 95.900 90.00 90.00 120.00
method Neutron Diffractionresolution 2.20 Å
ligand CL enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNeutron crystallographic studies of T4 lysozyme at cryogenic temperature., Li L, Shukla S, Meilleur F, Standaert RF, Pierce J, Myles DAA, Cuneo MJ, Protein Sci. 2017 Oct;26(10):2098-2104. doi: 10.1002/pro.3231. Epub 2017 Sep 6. PMID:28707382
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5vnq.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 5VNQ
  • CSU: Contacts of Structural Units for 5VNQ
  • Structure Factors (100 Kb)
  • Retrieve 5VNQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VNQ from S2C, [Save to disk]
    • View 5VNQ in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VNQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vnq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VNQ
  • Community annotation for 5VNQ at PDBWiki (http://pdbwiki.org)

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