5VOD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


Primary referenceStructural basis for potent antibody-mediated neutralization of human cytomegalovirus., Chandramouli S, Malito E, Nguyen T, Luisi K, Donnarumma D, Xing Y, Norais N, Yu D, Carfi A, Sci Immunol. 2017 Jun 30;2(12). pii: eaan1457. doi: 10.1126/sciimmunol.aan1457. PMID:28783665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]
  • Biological Unit Coordinates (5vod.pdb1.gz) 279 Kb
  • Biological Unit Coordinates (5vod.pdb2.gz) 551 Kb
  • LPC: Ligand-Protein Contacts for 5VOD
  • CSU: Contacts of Structural Units for 5VOD
  • Structure Factors (513 Kb)
  • Retrieve 5VOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VOD from S2C, [Save to disk]
  • Re-refined 5vod structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5VOD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vod_A] [5vod_B] [5vod_C] [5vod_D] [5vod_E] [5vod_H] [5vod_L]
  • SWISS-PROT database:

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