5VWO Transferase date May 22, 2017
title Ornithine Aminotransferase Inactivated By (1r,3s,4s)-3-Amino Fluorocyclopentane-1-Carboxylic Acid (Fcp)
authors R.Mascarenhas, D.Liu, H.Le, R.Silverman
compound source
Molecule: Ornithine Aminotransferase, Mitochondrial
Chain: A, B, C
Fragment: Unp Residues 36-439
Synonym: Ornithine Delta-Aminotransferase,Ornithine--Oxo-Ac Aminotransferase;
Ec: 2.6.1.13
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Oat
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.178 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.305 115.305 187.991 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.77 Å
ligand 9QJ enzyme Transferase E.C.2.6.1.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceSelective Targeting by a Mechanism-based Inactivator against PLP-Dependent Enzymes: Mechanisms of Inactivation and Alternative Turnover., Mascarenhas R, Le HV, Clevenger KD, Lehrer HJ, Ringe D, Kelleher NL, Silverman RB, Liu D, Biochemistry. 2017 Aug 17. doi: 10.1021/acs.biochem.7b00499. PMID:28816437
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (5vwo.pdb1.gz) 215 Kb
  • LPC: Ligand-Protein Contacts for 5VWO
  • CSU: Contacts of Structural Units for 5VWO
  • Structure Factors (3206 Kb)
  • Retrieve 5VWO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VWO from S2C, [Save to disk]
    • View 5VWO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VWO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vwo_C] [5vwo_B] [5vwo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VWO
  • Community annotation for 5VWO at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science