5VYD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Purification and Characterization of RhoPDE, a Retinylidene/Phosphodiesterase Fusion Protein and Potential Optogenetics Tool from the Choanoflagellate Salpingoeca rosetta., Lamarche LB, Kumar RP, Trieu MM, Devine EL, Theobald DL, Oprian DD, Biochemistry. 2017 Oct 4. doi: 10.1021/acs.biochem.7b00519. PMID:28976747

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (5vyd.pdb1.gz) 55 Kb Biological Unit Coordinates (5vyd.pdb2.gz) 55 Kb LPC: Ligand-Protein Contacts for 5VYD CSU: Contacts of Structural Units for 5VYD Structure Factors (1539 Kb) Retrieve 5VYD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VYD from S2C, [Save to disk]

View 5VYD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vyd_A] [5vyd_B] SWISS-PROT database:

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