5VYO date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
D, C, B, A


Primary referenceVirulence of the melioidosis pathogen Burkholderia pseudomallei requires the oxidoreductase membrane protein DsbB., McMahon RM, Ireland PM, Sarovich DS, Petit G, Jenkins CH, Sarkar-Tyson M, Currie BJ, Martin JL, Infect Immun. 2018 Feb 12. pii: IAI.00938-17. doi: 10.1128/IAI.00938-17. PMID:29440370
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (377 Kb) [Save to disk]
  • Biological Unit Coordinates (5vyo.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (5vyo.pdb2.gz) 94 Kb
  • Biological Unit Coordinates (5vyo.pdb3.gz) 95 Kb
  • Biological Unit Coordinates (5vyo.pdb4.gz) 93 Kb
  • CSU: Contacts of Structural Units for 5VYO
  • Structure Factors (1197 Kb)
  • Retrieve 5VYO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VYO from S2C, [Save to disk]
    • View 5VYO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vyo_A] [5vyo_B] [5vyo_C] [5vyo_D] [5vyo_E] [5vyo_F] [5vyo_G] [5vyo_H]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science