5VYY Chaperone Inhibitor date May 26, 2017
title Structure Of Human Hsp90-Alpha Bound To Resorcinylic Inhibit
authors N.S.Que, D.T.Gewirth
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Synonym: Heat Shock 86 Kda,Hsp86,Lipopolysaccharide-Associa Protein 2,Lps-Associated Protein 2,Renal Carcinoma Antigen
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.184 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.075 92.055 85.262 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand 9QY, EDO, FMT, MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure Based Design of a Grp94-Selective Inhibitor: Exploiting a Key Residue in Grp94 To Optimize Paralog-Selective Binding., Que NLS, Crowley VM, Duerfeldt AS, Zhao J, Kent CN, Blagg BSJ, Gewirth DT, J Med Chem. 2018 Apr 12;61(7):2793-2805. doi: 10.1021/acs.jmedchem.7b01608. Epub , 2018 Mar 20. PMID:29528635
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (5vyy.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (5vyy.pdb2.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 5VYY
  • CSU: Contacts of Structural Units for 5VYY
  • Structure Factors (639 Kb)
  • Retrieve 5VYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VYY from S2C, [Save to disk]
  • View 5VYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VYY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vyy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VYY
  • Community annotation for 5VYY at PDBWiki (http://pdbwiki.org)

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