5W15 Hydrolase date Jun 01, 2017
title Crystal Structure Of An Alphabeta Hydrolase Fold Protein Fr Burkholderia Ambifaria.
authors Ssgcid, Seattle Structural Genomics Center For Infectious Dis (Ssgcid)
compound source
Molecule: Alphabeta Hydrolase Fold Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Burkholderia Ambifaria (Strain Mc40-6)
Organism_taxid: 398577
Strain: Mc40-6
Gene: Bammc406_3075
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Buama.00095.A.B1
symmetry Space Group: P 1 21 1
R_factor 0.166 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.070 143.590 75.850 90.00 111.34 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand CL, EDO, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (389 Kb) [Save to disk]
  • Biological Unit Coordinates (5w15.pdb1.gz) 383 Kb
  • LPC: Ligand-Protein Contacts for 5W15
  • CSU: Contacts of Structural Units for 5W15
  • Structure Factors (2701 Kb)
  • Retrieve 5W15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W15 from S2C, [Save to disk]
  • Re-refined 5w15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5W15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W15
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w15_B] [5w15_A] [5w15_D] [5w15_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W15
  • Community annotation for 5W15 at PDBWiki (http://pdbwiki.org)

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