5W1X Viral Protein date Jun 05, 2017
title Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid L1 Bound To Heparin Oligosaccharides
authors X.S.Chen, J.Dasgupta
compound source
Molecule: Major Capsid Protein L1
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Engineered: Yes
Mutation: Yes
 Organism_scientific: Human Papillomavirus Type 18
Organism_taxid: 333761
Gene: L1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.171 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.993 106.490 237.661 88.46 85.75 69.02
method X-Ray Diffractionresolution 3.37 Å
ligand IDS, JHM enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceStructural basis of oligosaccharide receptor recognition by human Papillomavirus., Dasgupta J, Bienkowska-Haba M, Ortega ME, Patel HD, Bodevin S, Spillmann D, Bishop B, Sapp M, Chen XS, J Biol Chem. 2010 Nov 30. PMID:21115492
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2125 Kb) [Save to disk]
  • Biological Unit Coordinates (5w1x.pdb1.gz) 711 Kb
  • Biological Unit Coordinates (5w1x.pdb2.gz) 711 Kb
  • Biological Unit Coordinates (5w1x.pdb3.gz) 708 Kb
  • LPC: Ligand-Protein Contacts for 5W1X
  • CSU: Contacts of Structural Units for 5W1X
  • Structure Factors (968 Kb)
  • Retrieve 5W1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W1X from S2C, [Save to disk]
    • View 5W1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W1X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w1x_N] [5w1x_G] [5w1x_O] [5w1x_E] [5w1x_A] [5w1x_B] [5w1x_C] [5w1x_F] [5w1x_J] [5w1x_M] [5w1x_L] [5w1x_H] [5w1x_D] [5w1x_I] [5w1x_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W1X
  • Community annotation for 5W1X at PDBWiki (http://pdbwiki.org)

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