5W4R Nuclear Protein date Jun 12, 2017
title Structure Of Rorgt Bound To A Tertiary Alcohol
authors J.Spurlino
compound source
Molecule: Nuclear Receptor Ror-Gamma
Chain: A, B
Fragment: Unp Residues 265-481
Synonym: Nuclear Receptor Rzr-Gamma,Nuclear Receptor Subfam Group F Member 3,Rar-Related Orphan Receptor C,Retinoid-Rel Orphan Receptor-Gamma;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rorc, Nr1f3, Rorg, Rzrg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.190 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.361 97.361 128.218 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand 9WD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary reference6-Substituted quinolines as RORgammat inverse agonists., Barbay JK, Cummings MD, Abad M, Castro G, Kreutter KD, Kummer DA, Maharoof U, Milligan C, Nishimura R, Pierce J, Schalk-Hihi C, Spurlino J, Tanis VM, Urbanski M, Venkatesan H, Wang A, Woods C, Wolin R, Xue X, Edwards JP, Fourie AM, Leonard K, Bioorg Med Chem Lett. 2017 Dec 1;27(23):5277-5283. doi:, 10.1016/j.bmcl.2017.10.027. Epub 2017 Oct 16. PMID:29079472
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (5w4r.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 5W4R
  • CSU: Contacts of Structural Units for 5W4R
  • Structure Factors (101 Kb)
  • Retrieve 5W4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W4R from S2C, [Save to disk]
    • View 5W4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W4R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w4r_B] [5w4r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W4R
  • Community annotation for 5W4R at PDBWiki (http://pdbwiki.org)

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