OCA Atlas for 5W5R

5W5R

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

PYR, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
I, L, N, T, J, U, B, C, E, M, O, R, A, H, G, Q, K, P, F, D

Primary reference

Structural analysis reveals a pyruvate-binding activator site in the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase., Hill BL, Mascarenhas R, Patel HP, Asencion Diez MD, Wu R, Iglesias AA, Liu D, Ballicora MA, J Biol Chem. 2018 Nov 6. pii: RA118.004246. doi: 10.1074/jbc.RA118.004246. PMID:30401744

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1439 Kb) [Save to disk]

Biological Unit Coordinates (5w5r.pdb1.gz) 301 Kb

Biological Unit Coordinates (5w5r.pdb2.gz) 302 Kb

Biological Unit Coordinates (5w5r.pdb3.gz) 300 Kb

Biological Unit Coordinates (5w5r.pdb4.gz) 301 Kb

Biological Unit Coordinates (5w5r.pdb5.gz) 300 Kb

LPC: Ligand-Protein Contacts for 5W5R

CSU: Contacts of Structural Units for 5W5R

Structure Factors (19271 Kb)

Retrieve 5W5R in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5W5R from S2C, [Save to disk]

View 5W5R in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5w5r_A] [5w5r_B] [5w5r_C] [5w5r_D] [5w5r_E] [5w5r_F] [5w5r_G] [5w5r_H] [5w5r_I] [5w5r_J] [5w5r_K] [5w5r_L] [5w5r_M] [5w5r_N] [5w5r_O] [5w5r_P] [5w5r_Q] [5w5r_R] [5w5r_T] [5w5r_U]

SWISS-PROT database:

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