5W8B Lyase date Jun 21, 2017
title Carbonic Anhydrase II In Complex With Activating Histamine P Derivative
authors A.Bhatt, M.Ilies, R.Mckenna
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Fragment: Unp Residues 4-260
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.156 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.268 41.252 72.096 90.00 104.10 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand A57, A9J, GOL, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of Carbonic Anhydrase II in Complex with an Activating Ligand: Implications in Neuronal Function., Bhatt A, Mondal UK, Supuran CT, Ilies MA, McKenna R, Mol Neurobiol. 2018 Feb 8. pii: 10.1007/s12035-017-0854-2. doi:, 10.1007/s12035-017-0854-2. PMID:29423818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (5w8b.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 5W8B
  • CSU: Contacts of Structural Units for 5W8B
  • Structure Factors (997 Kb)
  • Retrieve 5W8B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W8B from S2C, [Save to disk]
    • View 5W8B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W8B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w8b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W8B
  • Community annotation for 5W8B at PDBWiki (http://pdbwiki.org)

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