5W9A	Antiviral Protein	date	Jun 22, 2017
title	The Structure Of The Trim5alpha Bbox- Coiled Coil In Complex
authors	J.R.Keown, D.C.Goldstone
compound		source
Molecule: Tripartite Motif-Containing Protein 5 Chain: A, B Fragment: Unp Residue 88-296 Synonym: Ring-Type E3 Ubiquitin Transferase Trim5,Trim5alph Ec: 2.3.2.27 Engineered: Yes Mutation: Yes		Organism_scientific: Macaca Mulatta Organism_common: Rhesus Macaque Organism_taxid: 9544 Gene: Trim5 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Microtubule-Associated Proteins 1a1b Light Chain Chain: C, D Fragment: Unp Residues 2-119 Synonym: Autophagy-Related Protein Lc3 B,Autophagy-Related Like Modifier Lc3 B,Map1 Light Chain 3-Like Protein 2,Map1a Light Chain 3 B,Map1amap1b Lc3 B,Microtubule-Associated Pr Light Chain 3 Beta; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Map1lc3b, Map1alc3 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 2 21 21	R_factor 0.260 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.014 115.319 174.164 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.74 Å
ligand	ZN	enzyme	Transferase E.C.2.3.2.27 BRENDA
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	A helical LIR mediates the interaction between the retroviral restriction factor Trim5alpha and the mammalian autophagy related ATG8 proteins., Keown JR, Black MM, Ferron A, Yap MW, Barnett MJ, Pearce FG, Stoye JP, Goldstone DC, J Biol Chem. 2018 Oct 3. pii: RA118.004202. doi: 10.1074/jbc.RA118.004202. PMID:30282803

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk] Biological Unit Coordinates (5w9a.pdb1.gz) 203 Kb LPC: Ligand-Protein Contacts for 5W9A CSU: Contacts of Structural Units for 5W9A Structure Factors (798 Kb) Retrieve 5W9A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5W9A from S2C, [Save to disk]

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5W9A

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5w9a_D] [5w9a_B] [5w9a_A] [5w9a_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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