5W9J Viral Protein date Jun 23, 2017
title Mers S Ectodomain Trimer In Complex With Variable Domain Of Neutralizing Antibody G4
authors J.Pallesen, A.B.Ward
compound source
Molecule: Spike Glycoprotein
Chain: D, A, G, J, K, L
Synonym: S Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Middle East Respiratory Syndrome-Relat Coronavirus;
Organism_taxid: 1335626
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: G4 Vh
Chain: E, B, H
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: G4 Vl
Chain: F, C, I
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, K, G, L


Primary referenceImmunogenicity and structures of a rationally designed prefusion MERS-CoV spike antigen., Pallesen J, Wang N, Corbett KS, Wrapp D, Kirchdoerfer RN, Turner HL, Cottrell CA, Becker MM, Wang L, Shi W, Kong WP, Andres EL, Kettenbach AN, Denison MR, Chappell JD, Graham BS, Ward AB, McLellan JS, Proc Natl Acad Sci U S A. 2017 Aug 14. pii: 201707304. doi:, 10.1073/pnas.1707304114. PMID:28807998
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (696 Kb) [Save to disk]
  • Biological Unit Coordinates (5w9j.pdb1.gz) 667 Kb
  • CSU: Contacts of Structural Units for 5W9J
  • Retrieve 5W9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W9J from S2C, [Save to disk]
  • View 5W9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W9J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w9j_B] [5w9j_C] [5w9j_K] [5w9j_J] [5w9j_D] [5w9j_I] [5w9j_G] [5w9j_A] [5w9j_F] [5w9j_E] [5w9j_L] [5w9j_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W9J
  • Community annotation for 5W9J at PDBWiki (http://pdbwiki.org)

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