5WC9 Dna Binding Protein date Jun 29, 2017
title Human Pit-1 And 4xcatt Dna Complex
authors S.Agarwal, T.Y.Cho
compound source
Molecule: Pituitary-Specific Positive Transcription Factor
Chain: B, A, E, F
Synonym: Pit-1,Growth Hormone Factor 1,Ghf-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pou1f1, Ghf1, Pit1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Cpcpaptptpcpaptptpcpaptptpcpaptptpcpgp 3');
Chain: C, G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'- D(Cpcpgpapaptpgpapaptpgpapaptpgpapaptpgp 3');
Chain: D, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.231 R_Free 0.277
length a length b length c angle alpha angle beta angle gamma
66.415 97.518 85.093 90.00 93.65 90.00
method X-Ray Diffractionresolution 3.15 Å
F, A, E, B

Primary referenceBiochemical and structural characterization of a novel cooperative binding mode by Pit-1 with CATT repeats in the macrophage migration inhibitory factor promoter., Agarwal S, Cho TY, Nucleic Acids Res. 2017 Nov 23. pii: 4653535. doi: 10.1093/nar/gkx1183. PMID:29186613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (5wc9.pdb1.gz) 125 Kb
  • Biological Unit Coordinates (5wc9.pdb2.gz) 122 Kb
  • CSU: Contacts of Structural Units for 5WC9
  • Structure Factors (841 Kb)
  • Retrieve 5WC9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WC9 from S2C, [Save to disk]
  • View 5WC9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WC9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wc9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wc9_D] [5wc9_G] [5wc9_A] [5wc9_E] [5wc9_C] [5wc9_H] [5wc9_B] [5wc9_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WC9
  • Community annotation for 5WC9 at PDBWiki (http://pdbwiki.org)

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