5WDU date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, MAN, NAG, PCA enzyme
Gene
Ontology
ChainFunctionProcessComponent
G, Q, F


J, R, A


Primary referenceImproving the Immunogenicity of Native-like HIV-1 Envelope Trimers by Hyperstabilization., Torrents de la Pena A, Julien JP, de Taeye SW, Garces F, Guttman M, Ozorowski G, Pritchard LK, Behrens AJ, Go EP, Burger JA, Schermer EE, Sliepen K, Ketas TJ, Pugach P, Yasmeen A, Cottrell CA, Torres JL, Vavourakis CD, van Gils MJ, LaBranche C, Montefiori DC, Desaire H, Crispin M, Klasse PJ, Lee KK, Moore JP, Ward AB, Wilson IA, Sanders RW, Cell Rep. 2017 Aug 22;20(8):1805-1817. doi: 10.1016/j.celrep.2017.07.077. PMID:28834745
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (866 Kb) [Save to disk]
  • Biological Unit Coordinates (5wdu.pdb1.gz) 845 Kb
  • LPC: Ligand-Protein Contacts for 5WDU
  • CSU: Contacts of Structural Units for 5WDU
  • Structure Factors (177 Kb)
  • Retrieve 5WDU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WDU from S2C, [Save to disk]
  • View 5WDU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wdu_I] [5wdu_A] [5wdu_B] [5wdu_C] [5wdu_D] [5wdu_E] [5wdu_F] [5wdu_G] [5wdu_H] [5wdu_J] [5wdu_K] [5wdu_L] [5wdu_M] [5wdu_N] [5wdu_O] [5wdu_P] [5wdu_Q] [5wdu_R] [5wdu_S] [5wdu_T] [5wdu_U] [5wdu_V] [5wdu_W] [5wdu_X]
  • SWISS-PROT database:

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