5WHC Hydrolase date Jul 16, 2017
title Usp7 In Complex With Cpd2 (4-(3-(1-Methylpiperidin-4-Yl)-1,2 Oxadiazol-5-Yl)Phenol)
authors J.M.Murray, L.Rouge
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7
Chain: A, B
Fragment: Residues 209-554
Synonym: Deubiquitinating Enzyme 7,Herpesvirus-Associated U Specific Protease,Ubiquitin Thioesterase 7,Ubiquitin-Specif Processing Protease 7;
Ec: 3.4.19.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp7, Hausp
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.292 69.279 77.070 90.00 95.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand AJJ, GOL enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of Small-Molecule Inhibitors of Ubiquitin Specific Protease 7 (USP7) Using Integrated NMR and in Silico Techniques., Di Lello P, Pastor R, Murray JM, Blake RA, Cohen F, Crawford TD, Drobnick J, Drummond J, Kategaya L, Kleinheinz T, Maurer T, Rouge L, Zhao X, Wertz I, Ndubaku C, Tsui V, J Med Chem. 2017 Dec 8. doi: 10.1021/acs.jmedchem.7b01293. PMID:29166018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk]
  • Biological Unit Coordinates (5whc.pdb1.gz) 116 Kb
  • Biological Unit Coordinates (5whc.pdb2.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 5WHC
  • CSU: Contacts of Structural Units for 5WHC
  • Structure Factors (700 Kb)
  • Retrieve 5WHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WHC from S2C, [Save to disk]
  • View 5WHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WHC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5whc_B] [5whc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WHC
  • Community annotation for 5WHC at PDBWiki (http://pdbwiki.org)

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