5WHP Protein Fibril date Jul 17, 2017
title Crystal Structure Of The Segment, Nfgtfs, From The A315t Fam Variant Of The Low Complexity Domain Of Tdp-43, Residues 31
authors E.L.Guenther, M.R.Sawaya, D.S.Eisenberg
compound source
Molecule: Segment Of Tar Dna-Binding Protein 43
Chain: A
Fragment: Unp Residues 312-317
Synonym: Tdp-43
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthetic Peptide Nfgtfs Corresponding Toseg 317 Of Tdp-43
symmetry Space Group: P 1 21 1
R_factor 0.087 R_Free 0.093
crystal
cell
length a length b length c angle alpha angle beta angle gamma
15.330 4.840 23.570 90.00 96.91 90.00
method X-Ray Diffractionresolution 1.00 Å
Primary referenceAtomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation., Guenther EL, Cao Q, Trinh H, Lu J, Sawaya MR, Cascio D, Boyer DR, Rodriguez JA, Hughes MP, Eisenberg DS, Nat Struct Mol Biol. 2018 May 21. pii: 10.1038/s41594-018-0064-2. doi:, 10.1038/s41594-018-0064-2. PMID:29786080
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5 Kb) [Save to disk]
  • Biological Unit Coordinates (5whp.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 5WHP
  • Structure Factors (40 Kb)
  • Retrieve 5WHP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WHP from S2C, [Save to disk]
  • View 5WHP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WHP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5whp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WHP
  • Community annotation for 5WHP at PDBWiki (http://pdbwiki.org)

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