5WIU Signaling Protein Antagonist date Jul 20, 2017
title Structure Of The Human D4 Dopamine Receptor In Complex With Nemonapride
authors D.Wacker, S.Wang, A.Levit, T.Che, R.M.Betz, J.D.Mccorvy, A.J.Venkatakrishnan, X.P.Huang, R.O.Dror, B.K.Shoichet, B.L.Ro
compound source
Molecule: D(4) Dopamine Receptor, Soluble Cytochrome B562 C
Chain: A
Synonym: D(2c) Dopamine Receptor, Dopamine D4 Receptor, Cyt 562;
Engineered: Yes
 Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Drd4, Cybc
Expression_system: Insecta
Expression_system_taxid: 50557
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1-Hm
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.688 164.047 84.129 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand AQD, GOL, OLA, PEG, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceD4 dopamine receptor high-resolution structures enable the discovery of selective agonists., Wang S, Wacker D, Levit A, Che T, Betz RM, McCorvy JD, Venkatakrishnan AJ, Huang XP, Dror RO, Shoichet BK, Roth BL, Science. 2017 Oct 20;358(6361):381-386. doi: 10.1126/science.aan5468. PMID:29051383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (5wiu.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 5WIU
  • CSU: Contacts of Structural Units for 5WIU
  • Structure Factors (890 Kb)
  • Retrieve 5WIU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WIU from S2C, [Save to disk]
    • View 5WIU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WIU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wiu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WIU
  • Community annotation for 5WIU at PDBWiki (http://pdbwiki.org)

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