5WJ6 Hydrolase Hydrolase Inhibitor date Jul 21, 2017
title Crystal Structure Of Glutaminase C In Complex With Inhibitor N-{5-[4-({5-[(Phenylacetyl)Amino]-1,3,4-Thiadiazol-2-Yl}Ami Piperidin-1-Yl]-1,3,4-Thiadiazol-2-Yl}Acetamide (Upgl-00004
authors Q.Huang, R.A.Cerione
compound source
Molecule: Glutaminase Kidney Isoform, Mitochondrial
Chain: A, C, D
Synonym: Gls,K-Glutaminase, L-Glutamine Amidohydrolase
Ec: 3.5.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gls, Gls1, Kiaa0838
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glutaminase Kidney Isoform, Mitochondrial
Chain: B
Synonym: Gls,K-Glutaminase, L-Glutamine Amidohydrolase
Ec: 3.5.1.2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gls, Gls1, Kiaa0838
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.652 138.010 175.769 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand B4A enzyme Hydrolase E.C.3.5.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCharacterization of the interactions of potent allosteric inhibitors with glutaminase C, a key enzyme in cancer cell glutamine metabolism., Huang Q, Stalnecker C, Zhang C, McDermott LA, Iyer P, O'Neill J, Reimer S, Cerione RA, Katt WP, J Biol Chem. 2018 Jan 9. pii: M117.810101. doi: 10.1074/jbc.M117.810101. PMID:29317493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (536 Kb) [Save to disk]
  • Biological Unit Coordinates (5wj6.pdb1.gz) 266 Kb
  • Biological Unit Coordinates (5wj6.pdb2.gz) 265 Kb
  • LPC: Ligand-Protein Contacts for 5WJ6
  • CSU: Contacts of Structural Units for 5WJ6
  • Structure Factors (579 Kb)
  • Retrieve 5WJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WJ6 from S2C, [Save to disk]
  • View 5WJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WJ6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wj6_D] [5wj6_B] [5wj6_A] [5wj6_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WJ6
  • Community annotation for 5WJ6 at PDBWiki (http://pdbwiki.org)

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