5WMO Immune System date Jul 30, 2017
title Crystal Structure Of Hla-B7 In Complex With Rpp, An Ebv Pept
authors S.Gras, J.Rossjohn
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-7 Alpha
Chain: A
Synonym: Mhc Class I Antigen B7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B, Hlab
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30

Molecule: Rpp Peptide From Ebv
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Epstein-Barr Virus Strain Ag876
Organism_taxid: 82830
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.571 81.802 109.568 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.62 Å
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceInability To Detect Cross-Reactive Memory T Cells Challenges the Frequency of Heterologous Immunity among Common Viruses., Rowntree LC, Nguyen THO, Halim H, Purcell AW, Rossjohn J, Gras S, Kotsimbos TC, Mifsud NA, J Immunol. 2018 Jun 15;200(12):3993-4003. doi: 10.4049/jimmunol.1800010. Epub, 2018 May 7. PMID:29735483
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5wmo.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 5WMO
  • Structure Factors (2582 Kb)
  • Retrieve 5WMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WMO from S2C, [Save to disk]
  • View 5WMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WMO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wmo_A] [5wmo_B] [5wmo_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WMO
  • Community annotation for 5WMO at PDBWiki (http://pdbwiki.org)

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