OCA Atlas for 5WRD

5WRD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

The crystal structure of mouse LC3B in complex with the FYCO1 LIR reveals the importance of the flanking region of the LIR motif., Sakurai S, Tomita T, Shimizu T, Ohto U, Acta Crystallogr F Struct Biol Commun. 2017 Mar 1;73(Pt 3):130-137. doi:, 10.1107/S2053230X17001911. Epub 2017 Feb 21. PMID:28291748

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]

Biological Unit Coordinates (5wrd.pdb1.gz) 21 Kb

Biological Unit Coordinates (5wrd.pdb2.gz) 21 Kb

Biological Unit Coordinates (5wrd.pdb3.gz) 4 Kb

Biological Unit Coordinates (5wrd.pdb4.gz) 4 Kb

Biological Unit Coordinates (5wrd.pdb5.gz) 24 Kb

Biological Unit Coordinates (5wrd.pdb6.gz) 24 Kb

LPC: Ligand-Protein Contacts for 5WRD

CSU: Contacts of Structural Units for 5WRD

Structure Factors (601 Kb)

Retrieve 5WRD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5WRD from S2C, [Save to disk]

Re-refined 5wrd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5WRD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wrd] [5wrd_A] [5wrd_B] [5wrd_C] [5wrd_D]

SWISS-PROT database:

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