5WSR Crystal structure of T-Hg-T pair containing DNA duplex date
authors Gan, J.H., Liu, H.H.
compound source
symmetry
R_factor
R_Free 0.1878
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand HG enzyme
Primary referenceFlexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex., Liu H, Cai C, Haruehanroengra P, Yao Q, Chen Y, Yang C, Luo Q, Wu B, Li J, Ma J, Sheng J, Gan J, Nucleic Acids Res. 2016 Dec 19. pii: gkw1296. doi: 10.1093/nar/gkw1296. PMID:27998930
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (5wsr.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 5WSR
  • CSU: Contacts of Structural Units for 5WSR
  • Structure Factors (97 Kb)
  • Retrieve 5WSR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WSR from S2C, [Save to disk]
  • Re-refined 5wsr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5WSR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WSR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wsr_A] [5wsr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WSR
  • Community annotation for 5WSR at PDBWiki (http://pdbwiki.org)

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