5WVD Transferase date Dec 24, 2016
title Structure Of Mnk1 In Complex With Ds12881479
authors Y.Matsui, H.Hanzawa
compound source
Molecule: Map Kinase Interacting Serinethreonine Kinase 1
Chain: A, B
Fragment: Unp Residues 37-341
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mknk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.239 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.635 92.635 174.437 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 7UX, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA novel inhibitor stabilizes the inactive conformation of MAPK-interacting kinase 1., Matsui Y, Yasumatsu I, Yoshida KI, Iimura S, Ikeno Y, Nawano T, Fukano H, Ubukata O, Hanzawa H, Tanzawa F, Isoyama T, Acta Crystallogr F Struct Biol Commun. 2018 Mar 1;74(Pt 3):156-160. doi:, 10.1107/S2053230X18002108. Epub 2018 Feb 26. PMID:29497019
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (5wvd.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 5WVD
  • CSU: Contacts of Structural Units for 5WVD
  • Structure Factors (747 Kb)
  • Retrieve 5WVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WVD from S2C, [Save to disk]
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    • Visual 3D analysis of 5WVD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wvd_B] [5wvd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WVD
  • Community annotation for 5WVD at PDBWiki (http://pdbwiki.org)

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