5WVE	Apoptosis	date	Dec 24, 2016
title	Apaf-1-Caspase-9 Holoenzyme
authors	Y.Li, M.Zhou, Q.Hu, Y.Shi
compound		source
Molecule: Apoptotic Protease-Activating Factor 1 Chain: A, C, E, G, I, K, M Synonym: Apaf-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apaf1, Kiaa0413 Expression_system: Insect Cell Expression Vector Ptie1 Expression_system_taxid: 266783
Molecule: Cytochrome C Chain: B, D, F, H, J, L, N Engineered: Yes		Organism_scientific: Equus Caballus Organism_common: Horse Organism_taxid: 9796 Gene: Cycs, Cyc Expression_system: Bacteria Expression_system_taxid: 2
Molecule: Apoptotic Protease-Activating Factor 1 Chain: O, P, Q, R, W, X Fragment: Card Domain, Unp Residues 1-102 Synonym: Apaf-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apaf1, Kiaa0413 Expression_system: Insect Cell Expression Vector Ptie1 Expression_system_taxid: 266783
Molecule: Caspase Chain: S, T, U, V, Y Fragment: Card Domain, Unp Residues 1-100 Synonym: Caspase-9 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Bacteria Expression_system_taxid: 2
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	4.40 Å
ligand	DTP, HEM, MG	enzyme
Gene Ontology	Chain Function Process Component F, N, L, J, B, H, D K, E, M, C, A, I, G Q, O, W, X, P, R S, T, Y, V, U

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1395 Kb) [Save to disk] Biological Unit Coordinates (5wve.pdb1.gz) 1381 Kb LPC: Ligand-Protein Contacts for 5WVE CSU: Contacts of Structural Units for 5WVE Retrieve 5WVE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WVE from S2C, [Save to disk]

View 5WVE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5WVE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wve_B] [5wve_K] [5wve_W] [5wve_R] [5wve_F] [5wve_Y] [5wve_L] [5wve_H] [5wve_J] [5wve_T] [5wve_E] [5wve_V] [5wve_D] [5wve_P] [5wve_I] [5wve_Q] [5wve_G] [5wve] [5wve_C] [5wve_N] [5wve_O] [5wve_S] [5wve_U] [5wve_X] [5wve_A] [5wve_M] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5WVE

Community annotation for 5WVE at PDBWiki (http://pdbwiki.org)

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