5WXC Immune System date Jan 07, 2017
title Crystal Structure Of Hla-A2402 In Complex With Avian Influe A(H7n9) Virus-Derived Peptide H7-25 (Data Set 2)
authors M.Zhao, K.Liu, Y.Chai, J.Qi, J.Liu, G.F.Gao
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-24 Alph
Chain: A, C
Fragment: Unp Residues 25-298
Synonym: Hla-A2402, Aw-24,Hla Class I Histocompatibility A Alpha Chain,Mhc Class I Antigen A24;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B, D
Synonym: Hb2m
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: H7-25-F
Chain: E, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Influenza A Virus (Achickenchina0282014(H7n9));
Organism_taxid: 1774282
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.373 67.292 88.346 90.00 98.43 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
D, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (5wxc.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (5wxc.pdb2.gz) 69 Kb
  • CSU: Contacts of Structural Units for 5WXC
  • Structure Factors (1092 Kb)
  • Retrieve 5WXC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WXC from S2C, [Save to disk]
  • View 5WXC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WXC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wxc_F] [5wxc_C] [5wxc_A] [5wxc_D] [5wxc_B] [5wxc_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WXC
  • Community annotation for 5WXC at PDBWiki (http://pdbwiki.org)

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