5WXF	Hydrolase Hydrolase Inhibitor	date	Jan 07, 2017
title	Crystal Structure Of Upa In Complex With Upain-2-2
authors	L.Jiang, M.Huang
compound		source
Molecule: Urokinase-Type Plasminogen Activator Chain B Chain: U Synonym: Upa Ec: 3.4.21.73 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Plau Expression_system: Komagataella Pastoris Expression_system_taxid: 4922
Molecule: Upain-2-2 Peptide Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Phage Display Vector Ptdisp Organism_taxid: 279974
symmetry	Space Group: H 3	R_factor 0.209 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.137 115.137 41.307 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.46 Å
ligand	HRG, SO4	enzyme	Hydrolase E.C.3.4.21.73 BRENDA
Gene Ontology	Chain Function Process Component U
Primary reference	Cleavage of peptidic inhibitors by target protease is caused by peptide conformational transition., Jiang L, Oldenburg E, Kromann-Hansen T, Xu P, Jensen JK, Andreasen PA, Huang M, Biochim Biophys Acta. 2018 Jun 27;1862(9):2017-2023. doi:, 10.1016/j.bbagen.2018.06.016. PMID:29959058

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (5wxf.pdb1.gz) 89 Kb LPC: Ligand-Protein Contacts for 5WXF CSU: Contacts of Structural Units for 5WXF Structure Factors (517 Kb) Retrieve 5WXF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WXF from S2C, [Save to disk]

View 5WXF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5WXF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wxf_U] [5wxf_P] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5WXF

Community annotation for 5WXF at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---