5WY8	Hydrolase Protein Binding	date	Jan 11, 2017
title	Crystal Structure Of Ptp Delta Ig1-Ig3 In Complex With Il1ra Ig3
authors	H.M.Kim, S.Y.Won, D.Kim
compound		source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Delta Chain: A Fragment: Unp Residues 21-318 Synonym: R-Ptp-Delta Ec: 3.1.3.48 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptprd Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
Molecule: Interleukin-1 Receptor Accessory Protein-Like 1 Chain: B Fragment: Unp Residues 27-349 Synonym: Il1rapl-1,Oligophrenin-4,Three Immunoglobulin Doma Containing Il-1 Receptor-Related 2,Tigirr-2,X-Linked Interl Receptor Accessory Protein-Like 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Il1rapl1, Ophn4 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 32 1 2	R_factor 0.233 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.416 110.416 210.536 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.07 Å
ligand	BMA, FUC, MAN, NAG, ZN	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Primary reference	LAR-RPTP Clustering Is Modulated by Competitive Binding between Synaptic Adhesion Partners and Heparan Sulfate., Won SY, Kim CY, Kim D, Ko J, Um JW, Lee SB, Buck M, Kim E, Heo WD, Lee JO, Kim HM, Front Mol Neurosci. 2017 Oct 13;10:327. doi: 10.3389/fnmol.2017.00327., eCollection 2017. PMID:29081732

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (5wy8.pdb1.gz) 103 Kb LPC: Ligand-Protein Contacts for 5WY8 CSU: Contacts of Structural Units for 5WY8 Structure Factors (713 Kb) Retrieve 5WY8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WY8 from S2C, [Save to disk]

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wy8_A] [5wy8_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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