5X27 Transferase date Jan 31, 2017
title Crystal Structure Of Egfr 696-1022 L858r In Complex With Skl
authors C.H.Yun
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Fragment: Unp Residues 696-1022
Synonym: Proto-Oncogene C-Erbb-1,Receptor Tyrosine-Protein Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb, Erbb1, Her1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: I 2 3
R_factor 0.203 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.384 145.384 145.384 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand 7XR, CL enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into drug development strategy targeting EGFR T790M/C797S., Zhu SJ, Zhao P, Yang J, Ma R, Yan XE, Yang SY, Yang JW, Yun CH, Oncotarget. 2018 Jan 10;9(17):13652-13665. doi: 10.18632/oncotarget.24113., eCollection 2018 Mar 2. PMID:29568384
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5x27.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5X27
  • CSU: Contacts of Structural Units for 5X27
  • Structure Factors (106 Kb)
  • Retrieve 5X27 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X27 from S2C, [Save to disk]
  • View 5X27 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X27
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x27_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X27
  • Community annotation for 5X27 at PDBWiki (http://pdbwiki.org)

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