5X8Q Transferase Ihibitor date Mar 03, 2017
title Crystal Structure Of The Mutant Human Ror Gamma Ligand Bindi With Rockogenin.
authors M.Noguchi, A.Nomura, K.Murase, S.Doi, K.Yamaguchi, T.Adachi
compound source
Molecule: Nuclear Receptor Ror-Gamma
Chain: A, C, E, G
Fragment: Unp Residues 261-518
Synonym: Nuclear Receptor Rzr-Gamma,Nuclear Receptor Subfam Group F Member 3,Rar-Related Orphan Receptor C,Retinoid-Rel Orphan Receptor-Gamma;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rorc, Nr1f3, Rorg, Rzrg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Corepressor 2
Chain: B, D, F, H
Fragment: Unp Residues 2346-2367
Synonym: N-Cor2,Ctg Repeat Protein 26,Smap270,Silencing Med Retinoic Acid And Thyroid Hormone Receptor,Smrt,T3 Receptor Associating Factor,Trac,Thyroid-,Retinoic-Acid-Receptor-Ass Corepressor;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ncor2, Ctg26
Expression_system: Synthetic Construct
Expression_system_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.630 71.940 99.210 90.00 90.06 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 82R enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (5x8q.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (5x8q.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (5x8q.pdb3.gz) 45 Kb
  • Biological Unit Coordinates (5x8q.pdb4.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 5X8Q
  • CSU: Contacts of Structural Units for 5X8Q
  • Structure Factors (2502 Kb)
  • Retrieve 5X8Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X8Q from S2C, [Save to disk]
  • Re-refined 5x8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5X8Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X8Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x8q_C] [5x8q_F] [5x8q_G] [5x8q_E] [5x8q_H] [5x8q_A] [5x8q_D] [5x8q_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X8Q
  • Community annotation for 5X8Q at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science