5X9S	Oncoprotein	date	Mar 09, 2017
title	Crystal Structure Of Fully Modified H-Ras-Gppnhp
authors	S.Matsumoto, H.Ke, Y.Murashima, H.Taniguchi-Tamura, R.Miyamoto, Y.Yoshikawa, T.Kumasaka, E.Mizohata, H.Edamatsu, T.Kataoka
compound		source
Molecule: Gtpase Hras Chain: A Fragment: Unp Residues 1-166 Synonym: H-Ras-1,Ha-Ras,Transforming Protein P21,C-H-Ras,P2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hras, Hras1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: H 3 2	R_factor 0.184 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.475 88.475 134.047 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CA, GNP, MG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for intramolecular interaction of post-translationally modified H-Ras*GTP prepared by protein ligation., Ke H, Matsumoto S, Murashima Y, Taniguchi-Tamura H, Miyamoto R, Yoshikawa Y, Tsuda C, Kumasaka T, Mizohata E, Edamatsu H, Kataoka T, FEBS Lett. 2017 Aug;591(16):2470-2481. doi: 10.1002/1873-3468.12759. Epub 2017, Aug 2. PMID:28730604

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (5x9s.pdb1.gz) 28 Kb LPC: Ligand-Protein Contacts for 5X9S CSU: Contacts of Structural Units for 5X9S Structure Factors (104 Kb) Retrieve 5X9S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5X9S from S2C, [Save to disk]

View 5X9S in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5X9S

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5x9s_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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