5XFA date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FCO, FES, MG, NI, SF4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, F


D, H


E, A


G, C


Primary referenceStructural basis of the redox switches in the NAD+-reducing soluble [NiFe]-hydrogenase., Shomura Y, Taketa M, Nakashima H, Tai H, Nakagawa H, Ikeda Y, Ishii M, Igarashi Y, Nishihara H, Yoon KS, Ogo S, Hirota S, Higuchi Y, Science. 2017 Sep 1;357(6354):928-932. doi: 10.1126/science.aan4497. PMID:28860386
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (457 Kb) [Save to disk]
  • Biological Unit Coordinates (5xfa.pdb1.gz) 229 Kb
  • Biological Unit Coordinates (5xfa.pdb2.gz) 228 Kb
  • LPC: Ligand-Protein Contacts for 5XFA
  • CSU: Contacts of Structural Units for 5XFA
  • Structure Factors (4191 Kb)
  • Retrieve 5XFA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XFA from S2C, [Save to disk]
    • View 5XFA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xfa_A] [5xfa_B] [5xfa_C] [5xfa_D] [5xfa_E] [5xfa_F] [5xfa_G] [5xfa_H]
  • SWISS-PROT database:

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