5XFF Transferase date Apr 10, 2017
title Crystal Structure Of Ly2874455 In Complex Of Fgfr4 Gatekeepe (V550l)
authors D.Wu, Y.Chen
compound source
Molecule: Fibroblast Growth Factor Receptor 4
Chain: A
Synonym: Fgfr-4
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgfr4, Jtk2, Tkf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.265 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.291 62.291 184.586 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 6LF enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLY2874455 potently inhibits FGFR gatekeeper mutants and overcomes mutation-based resistance., Wu D, Guo M, Min X, Dai S, Li M, Tan S, Li G, Chen X, Ma Y, Li J, Jiang L, Qu L, Zhou Z, Chen Z, Chen L, Xu G, Chen Y, Chem Commun (Camb). 2018 Oct 23;54(85):12089-12092. doi: 10.1039/c8cc07546h. PMID:30298149
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (5xff.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 5XFF
  • CSU: Contacts of Structural Units for 5XFF
  • Structure Factors (264 Kb)
  • Retrieve 5XFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XFF from S2C, [Save to disk]
  • View 5XFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XFF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xff_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XFF
  • Community annotation for 5XFF at PDBWiki (http://pdbwiki.org)

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