5XFO Transcription date Apr 11, 2017
title Structure Of The N-Terminal Domains Of Phf1
authors Z.Wang, H.Li
compound source
Molecule: Phd Finger Protein 1
Chain: A
Fragment: Unp Residues 25-340
Synonym: Hphf1,Polycomb-Like Protein 1,Hpcl1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phf1, Pcl1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.467 66.772 76.165 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePolycomb-like proteins link the PRC2 complex to CpG islands., Li H, Liefke R, Jiang J, Kurland JV, Tian W, Deng P, Zhang W, He Q, Patel DJ, Bulyk ML, Shi Y, Wang Z, Nature. 2017 Sep 14;549(7671):287-291. doi: 10.1038/nature23881. Epub 2017 Sep 6. PMID:28869966
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (5xfo.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 5XFO
  • CSU: Contacts of Structural Units for 5XFO
  • Structure Factors (970 Kb)
  • Retrieve 5XFO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XFO from S2C, [Save to disk]
    • View 5XFO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5XFO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xfo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5XFO
  • Community annotation for 5XFO at PDBWiki (http://pdbwiki.org)

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