5XJL Splicing date May 02, 2017
title Crystal Structure Of The Gemin2-Binding Domain Of Smn, Gemin Complex With Smd1d2feg From Human
authors R.Zhang
compound source
Molecule: Gem-Associated Protein 2
Chain: 2
Synonym: Gemin-2,Component Of Gems 2,Survival Of Motor Neur Protein-Interacting Protein 1,Smn-Interacting Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gemin2, Sip1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Small Nuclear Ribonucleoprotein Sm D1
Chain: A
Synonym: Sm-D1,Sm-D Autoantigen,Snrnp Core Protein D1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snrpd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Small Nuclear Ribonucleoprotein Sm D2
Chain: B
Synonym: Sm-D2,Snrnp Core Protein D2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snrpd2, Snrpd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Small Nuclear Ribonucleoprotein E
Chain: E
Synonym: Snrnp-E,Sm Protein E,Sme
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snrpe
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Small Nuclear Ribonucleoprotein F
Chain: F
Synonym: Snrnp-F,Sm Protein F,Smf
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snrpf, Pbscf
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Small Nuclear Ribonucleoprotein G
Chain: G
Synonym: Snrnp-G,Sm Protein G,Smg
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snrpg, Pbscg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Survival Motor Neuron Protein
Chain: M
Synonym: Component Of Gems 1,Gemin-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smn1, Smn, Smnt, Smn2, Smnc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.830 84.600 104.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
2


A

  • catalytic step 2 spliceosome...
  • B

  • catalytic step 2 spliceosome...
  • E

  • catalytic step 2 spliceosome...
  • F

  • catalytic step 2 spliceosome...
  • G

  • catalytic step 2 spliceosome...
  • M


    Primary referenceStructure of a Key Intermediate of the SMN Complex Reveals Gemin2's Crucial Function in snRNP Assembly., Zhang R, So BR, Li P, Yong J, Glisovic T, Wan L, Dreyfuss G, Cell. 2011 Aug 5;146(3):384-95. PMID:21816274
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (5xjl.pdb1.gz) 97 Kb
  • CSU: Contacts of Structural Units for 5XJL
  • Structure Factors (283 Kb)
  • Retrieve 5XJL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XJL from S2C, [Save to disk]
  • View 5XJL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XJL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xjl_2] [5xjl_E] [5xjl_B] [5xjl_F] [5xjl_M] [5xjl_G] [5xjl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XJL
  • Community annotation for 5XJL at PDBWiki (http://pdbwiki.org)

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