5XM5 Metal Binding Protein date May 12, 2017
title Crystal Structure Of Zinc Binding Protein Zint At 1.49 Angst E. Coli
authors J.Chen, L.Wang, J.Guo, Y.Xu
compound source
Molecule: Metal-Binding Protein Zint
Chain: A, B
Fragment: Unp Residue 24-216
Synonym: Cadmium-Induced Protein Zint
Engineered: Yes
 Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Zint, Yoda, B1973, Jw1956
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.021 65.724 73.532 90.00 91.24 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand NA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (5xm5.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (5xm5.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 5XM5
  • CSU: Contacts of Structural Units for 5XM5
  • Structure Factors (1166 Kb)
  • Retrieve 5XM5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XM5 from S2C, [Save to disk]
  • Re-refined 5xm5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5XM5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5XM5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xm5_B] [5xm5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5XM5
  • Community annotation for 5XM5 at PDBWiki (http://pdbwiki.org)

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