5XMA	Transferase Dna	date	May 13, 2017
title	Crystal Structure Of Asfvpolx In Complex With Dna Enzyme At Space Group
authors	H.H.Liu, J.H.Gan
compound		source
Molecule: Repair Dna Polymerase X Chain: A, B Synonym: Pol X Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: African Swine Fever Virus (Strain Bada Vero-Adapted); Organism_common: Ba71v Organism_taxid: 10498 Strain: Badajoz 1971 Vero-Adapted Gene: Ba71v-97, O174l Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (36-Mer) Chain: E Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dnarna (5'-D(Apcpgpapgpapgpapgpapt)-R D(Pgpgptpgpcpgptptpapcpa)-3'); Chain: F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 43 21 2	R_factor 0.258 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.846 78.846 241.677 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.80 Å
ligand		enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, B DNA-directed DNA polymerase ...
Primary reference	Crystal structure of an RNA-cleaving DNAzyme., Liu H, Yu X, Chen Y, Zhang J, Wu B, Zheng L, Haruehanroengra P, Wang R, Li S, Lin J, Li J, Sheng J, Huang Z, Ma J, Gan J, Nat Commun. 2017 Dec 8;8(1):2006. doi: 10.1038/s41467-017-02203-x. PMID:29222499

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (5xma.pdb1.gz) 80 Kb CSU: Contacts of Structural Units for 5XMA Structure Factors (159 Kb) Retrieve 5XMA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XMA from S2C, [Save to disk]

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Visual 3D analysis of 5XMA

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xma_E] [5xma_B] [5xma_A] [5xma_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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