5XOU	Dna Binding Protein	date	May 31, 2017
title	Crystal Structure Of T. Thermophilus Argonaute Protein Compl A Bulge 7t8 On The Guide Strand
authors	G.Sheng, J.Wang, H.Zhao, Y.Wang
compound		source
Molecule: Ttago (D546n) Chain: A, B Synonym: Uncharacterized Protein Engineered: Yes Mutation: Yes		Organism_scientific: Thermus Thermophilus (Strain Hb27 At 163 Dsm 7039); Organism_taxid: 262724 Strain: Hb27 Atcc Baa-163 Dsm 7039 Gene: Tt_p0026 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Dna (5'-D(Ptpgpapgpgptpaptpgpgptptpg Chain: C, E Engineered: Yes		Synthetic: Yes Organism_scientific: Thermus Thermophilus Organism_taxid: 274
Molecule: Dna (5'-D(Apcpapapcpcptpapcptpapcpcp 3'); Chain: D, F Engineered: Yes		Synthetic: Yes Organism_scientific: Thermus Thermophilus Organism_taxid: 274
symmetry	Space Group: P 21 21 21	R_factor 0.235 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 112.747 114.982 160.441 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.63 Å
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes., Sheng G, Gogakos T, Wang J, Zhao H, Serganov A, Juranek S, Tuschl T, Patel DJ, Wang Y, Nucleic Acids Res. 2017 Sep 6;45(15):9149-9163. doi: 10.1093/nar/gkx547. PMID:28911094

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (421 Kb) [Save to disk] Biological Unit Coordinates (5xou.pdb1.gz) 411 Kb LPC: Ligand-Protein Contacts for 5XOU CSU: Contacts of Structural Units for 5XOU Structure Factors (1613 Kb) Retrieve 5XOU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XOU from S2C, [Save to disk]

View 5XOU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5XOU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xou_F] [5xou_A] [5xou_B] [5xou_D] [5xou_E] [5xou_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5XOU

Community annotation for 5XOU at PDBWiki (http://pdbwiki.org)

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