5XQK Transferase date Jun 07, 2017
title Crystal Structure Of Transketolase In Complex With Xylulose- Phosphate From Pichia Stipitis
authors T.L.Li, N.S.Hsu, Y.L.Wang
compound source
Molecule: Transketolase
Chain: A
Synonym: Tk
Ec: 2.2.1.1
Engineered: Yes
Organism_scientific: Scheffersomyces Stipitis Cbs 6054
Organism_common: Yeast
Organism_taxid: 322104
Strain: Cbs 6054
Gene: Tkt, Tkt1, Picst_67105
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_strain: K-12
symmetry Space Group: C 2 2 21
R_factor 0.123 R_Free 0.134
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.709 183.724 98.856 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.12 Å
ligand CA, PEG, T5X enzyme Transferase E.C.2.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEvidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions., Hsu NS, Wang YL, Lin KH, Chang CF, Ke SC, Lyu SY, Hsu LJ, Li YS, Chen SC, Wang KC, Li TL, Chembiochem. 2018 Nov 16;19(22):2395-2402. doi: 10.1002/cbic.201800378. Epub 2018, Oct 18. PMID:30155962
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (5xqk.pdb1.gz) 468 Kb
  • LPC: Ligand-Protein Contacts for 5XQK
  • CSU: Contacts of Structural Units for 5XQK
  • Structure Factors (4721 Kb)
  • Retrieve 5XQK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XQK from S2C, [Save to disk]
  • View 5XQK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XQK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xqk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XQK
  • Community annotation for 5XQK at PDBWiki (http://pdbwiki.org)

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