5XUI Hydrolase Hydrolase Inhibitor date Jun 23, 2017
title Crystal Structure Of Pde10a In Complex With 2-Methyl-5-[2-([ 4]Triazolo[1,5-A]Pyrimidin-2-Yl)Et Hyl]Pyrazolo[1,5-A]Pyrim
authors Y.Amano, K.Honbou
compound source
Molecule: Camp And Camp-Inhibited Cgmp 3',5'-Cyclic Phospho 10a;
Chain: A, B
Fragment: Unp Residues 449-789
Ec: 3.1.4.17,3.1.4.35
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pde10a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.345 81.443 158.745 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.77 Å
ligand 8G3, MG, ZN enzyme Hydrolase E.C.3.1.4.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFragment-Based Discovery of Pyrimido[1,2-b]indazole PDE10A Inhibitors., Chino A, Seo R, Amano Y, Namatame I, Hamaguchi W, Honbou K, Mihara T, Yamazaki M, Tomishima M, Masuda N, Chem Pharm Bull (Tokyo). 2018;66(3):286-294. doi: 10.1248/cpb.c17-00836. PMID:29491261
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (5xui.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (5xui.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 5XUI
  • CSU: Contacts of Structural Units for 5XUI
  • Structure Factors (476 Kb)
  • Retrieve 5XUI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XUI from S2C, [Save to disk]
    • View 5XUI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5XUI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xui_A] [5xui_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5XUI
  • Community annotation for 5XUI at PDBWiki (http://pdbwiki.org)

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