5XV3	Protein Binding	date	Jun 26, 2017
title	Crystal Structure Of Atg101-Atg13horma
authors	B.W.Kim, H.K.Song
compound		source
Molecule: Autophagy-Related Protein 13 Chain: A, C Fragment: Unp Residues 1-190 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Atg13, Kiaa0652 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Autophagy-Related Protein 101 Chain: B, D Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Atg101, C12orf44, Pp894 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor 0.232 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.775 101.116 125.260 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.57 Å
ligand	PEG	enzyme
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	The C-terminal region of ATG101 bridges ULK1 and PtdIns3K complex in autophagy initiation., Kim BW, Jin Y, Kim J, Kim JH, Jung J, Kang S, Kim IY, Kim J, Cheong H, Song HK, Autophagy. 2018;14(12):2104-2116. doi: 10.1080/15548627.2018.1504716. Epub 2018, Aug 16. PMID:30081750

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk] Biological Unit Coordinates (5xv3.pdb1.gz) 128 Kb Biological Unit Coordinates (5xv3.pdb2.gz) 128 Kb LPC: Ligand-Protein Contacts for 5XV3 CSU: Contacts of Structural Units for 5XV3 Structure Factors (565 Kb) Retrieve 5XV3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XV3 from S2C, [Save to disk]

View 5XV3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5XV3

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xv3_C] [5xv3_D] [5xv3_A] [5xv3_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5XV3

Community annotation for 5XV3 at PDBWiki (http://pdbwiki.org)

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