5XYI date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


X


Y


Z


a


b


c


d


e


g


n


Primary referenceCryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii., Li Z, Guo Q, Zheng L, Ji Y, Xie YT, Lai DH, Lun ZR, Suo X, Gao N, Cell Res. 2017 Aug 15. doi: 10.1038/cr.2017.104. PMID:28809395
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1318 Kb) [Save to disk]
  • Biological Unit Coordinates (5xyi.pdb1.gz) 1307 Kb
  • CSU: Contacts of Structural Units for 5XYI
  • Retrieve 5XYI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XYI from S2C, [Save to disk]
    • View 5XYI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xyi_2] [5xyi_A] [5xyi_B] [5xyi_C] [5xyi_D] [5xyi_E] [5xyi_F] [5xyi_G] [5xyi_H] [5xyi_I] [5xyi_J] [5xyi_K] [5xyi_L] [5xyi_M] [5xyi_N] [5xyi_O] [5xyi_P] [5xyi_Q] [5xyi_R] [5xyi_S] [5xyi_T] [5xyi_U] [5xyi_V] [5xyi_W] [5xyi_X] [5xyi_Y] [5xyi_Z] [5xyi_a] [5xyi_b] [5xyi_c] [5xyi_d] [5xyi_e] [5xyi_g] [5xyi_n]
  • SWISS-PROT database:

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