5Y1B		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	8KL, NAG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Glycoside hydrolase family 18 and 20 enzymes are novel targets of the traditional medicine berberine., Duan Y, Liu T, Zhou Y, Dou T, Yang Q, J Biol Chem. 2018 Oct 5;293(40):15429-15438. doi: 10.1074/jbc.RA118.004351. Epub , 2018 Aug 22. PMID:30135205

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (5y1b.pdb1.gz) 104 Kb Biological Unit Coordinates (5y1b.pdb2.gz) 205 Kb LPC: Ligand-Protein Contacts for 5Y1B CSU: Contacts of Structural Units for 5Y1B Structure Factors (1377 Kb) Retrieve 5Y1B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5Y1B from S2C, [Save to disk]

View 5Y1B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5y1b_A] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---