5Y3A	Signaling Protein	date	Jul 28, 2017
title	Crystal Structure Of Ragulator Complex (P18 49-161)
authors	T.Zhang, J.Ding
compound		source
Molecule: Ragulator Complex Protein Lamtor1 Chain: A, F Fragment: Coiled Coil, Unp Residues 50-161 Synonym: Late Endosomallysosomal Adaptor And Mapk And Mtor 1,Lipid Raft Adaptor Protein P18,Protein Associated With Dr Endosomes,P27kip1-Releasing Factor From Rhoa,P27rf-Rho; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lamtor1, C11orf59, Pdro, Pp7157 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Codon Plus Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28sumo
Molecule: Ragulator Complex Protein Lamtor2 Chain: B, G Fragment: Roadblock Domain Synonym: Endosomal Adaptor Protein P14,Late Endosomallysos Interacting Protein,Late Endosomallysosomal Adaptor And Ma Mtor Activator 2,Mitogen-Activated Protein-Binding Protein- Interacting Protein,Mapbp-Interacting Protein,Roadblock Dom Containing Protein 3; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lamtor2, Mapbpip, Robld3, Hspc003 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Codon Plus Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet
Molecule: Ragulator Complex Protein Lamtor3 Chain: C, H Fragment: Roadblock Domain Synonym: Late Endosomallysosomal Adaptor And Mapk And Mtor 3,Mek-Binding Partner 1,Mp1,Mitogen-Activated Protein Kinas 1-Interacting Protein 1,Mitogen-Activated Protein Kinase Sc Protein 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lamtor3, Map2k1ip1, Mapksp1, Pro2783 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Codon Plus Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Ragulator Complex Protein Lamtor4 Chain: D, I Fragment: Roadblock Domain Synonym: Late Endosomallysosomal Adaptor And Mapk And Mtor 4; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lamtor4, C7orf59 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Codon Plus Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet
Molecule: Ragulator Complex Protein Lamtor5 Chain: E, J Fragment: Roadblock Domain Synonym: Hepatitis B Virus X-Interacting Protein,Hbx-Intera Protein,Late Endosomallysosomal Adaptor And Mapk And Mtor 5; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lamtor5, Hbxip, Xip Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Codon Plus Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet
symmetry	Space Group: P 21 21 21	R_factor 0.246 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.341 89.626 232.173 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component B, G D, I F, A H, C J, E
Primary reference	Structural basis for Ragulator functioning as a scaffold in membrane-anchoring of Rag GTPases and mTORC1., Zhang T, Wang R, Wang Z, Wang X, Wang F, Ding J, Nat Commun. 2017 Nov 9;8(1):1394. doi: 10.1038/s41467-017-01567-4. PMID:29123114

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk] Biological Unit Coordinates (5y3a.pdb1.gz) 154 Kb Biological Unit Coordinates (5y3a.pdb2.gz) 152 Kb LPC: Ligand-Protein Contacts for 5Y3A CSU: Contacts of Structural Units for 5Y3A Structure Factors (470 Kb) Retrieve 5Y3A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5Y3A from S2C, [Save to disk]

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Visual 3D analysis of 5Y3A

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5y3a_E] [5y3a_B] [5y3a_H] [5y3a_I] [5y3a_G] [5y3a_F] [5y3a_C] [5y3a_A] [5y3a_D] [5y3a_J] SWISS-PROT database: Domain organization of by SWISSPFAM

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