5Y6E	Hydrolase	date	Aug 11, 2017
title	Vim-2 Metallo-Beta-Lactamase In Complex With (R)-2-(4-Hydrox 2-((S)-3-Mercapto-2-Methylpropanamido)Acetic Acid (Compound
authors	G.B.Li
compound		source
Molecule: Beta-Lactamase Class B Vim-2 Chain: A, B Fragment: Unp Residues 32-262 Synonym: Blavim-2,Metallo Beta Lactamase Vim-2,Metallo Beta Lactamase,Metallo-Beta Lactamase Protein,Metallo-Beta-Lacta 2,Vim-2 Class B Beta-Lactamase,Vim-2 Class B Metallo B-Lact Metallo Beta-Lactamase,Vim-2 Type Metallo-Beta-Lactamase; Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 287 Gene: Blavim-2, Bla Vim-2, Bla-Vim-2, Blasvim-2, Blavim2, B 2, Vim-2, Paerug_p32_london_17_vim_2_10_11_06255; Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Opinf Vector Based
symmetry	Space Group: C 1 2 1	R_factor 0.137 R_Free 0.173
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.355 74.452 64.456 90.00 129.46 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	8PO, FMT, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	((S)-3-Mercapto-2-methylpropanamido)acetic acid derivatives as metallo-beta-lactamase inhibitors: Synthesis, kinetic and crystallographic studies., Liu S, Jing L, Yu ZJ, Wu C, Zheng Y, Zhang E, Chen Q, Yu Y, Guo L, Wu Y, Li GB, Eur J Med Chem. 2018 Feb 10;145:649-660. doi: 10.1016/j.ejmech.2018.01.032. Epub , 2018 Jan 11. PMID:29353720

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (5y6e.pdb1.gz) 41 Kb Biological Unit Coordinates (5y6e.pdb2.gz) 41 Kb LPC: Ligand-Protein Contacts for 5Y6E CSU: Contacts of Structural Units for 5Y6E Structure Factors (551 Kb) Retrieve 5Y6E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5Y6E from S2C, [Save to disk]

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5y6e_B] [5y6e_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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