5Y7G Crystal structure of paFAN1 bound to 1nt 5'flap DNA with gap date
authors Cho, Y., Jin, H.
compound source
symmetry
R_factor
R_Free 0.2798
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.40
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • phosphodiesterase I activity...
  • 5'-3' exonuclease activity


    • Primary referenceStructural mechanism of DNA interstrand cross-link unhooking by the bacterial FAN1 nuclease., Jin H, Roy U, Lee G, Scharer OD, Cho Y, J Biol Chem. 2018 Apr 27;293(17):6482-6496. doi: 10.1074/jbc.RA118.002171. Epub, 2018 Mar 7. PMID:29514982
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (722 Kb) [Save to disk]
  • Biological Unit Coordinates (5y7g.pdb1.gz) 239 Kb
  • Biological Unit Coordinates (5y7g.pdb2.gz) 241 Kb
  • Biological Unit Coordinates (5y7g.pdb3.gz) 239 Kb
  • LPC: Ligand-Protein Contacts for 5Y7G
  • CSU: Contacts of Structural Units for 5Y7G
  • Structure Factors (1245 Kb)
  • Retrieve 5Y7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y7G from S2C, [Save to disk]
    • View 5Y7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y7G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5y7g from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y7g_H] [5y7g_N] [5y7g_D] [5y7g_G] [5y7g_C] [5y7g_F] [5y7g_B] [5y7g_I] [5y7g_E] [5y7g_L] [5y7g_J] [5y7g_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y7G
  • Community annotation for 5Y7G at PDBWiki (http://pdbwiki.org)

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