5Y9M Transferase date Aug 25, 2017
title Crystal Structure Of Ck2a2 Form 3
authors M.Tsuyuguchi, T.Kinoshita
compound source
Molecule: Casein Kinase II Subunit Alpha'
Chain: X, A
Fragment: Unp Residues 1-334
Synonym: Ck II Alpha'
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk2a2, Ck2a2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.766 92.052 102.891 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand NIO, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, X


Primary referenceCrystal structures of human CK2alpha2 in new crystal forms arising from a subtle difference in salt concentration., Tsuyuguchi M, Nakaniwa T, Kinoshita T, Acta Crystallogr F Struct Biol Commun. 2018 May 1;74(Pt 5):288-293. doi:, 10.1107/S2053230X18005204. Epub 2018 Apr 16. PMID:29717996
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (5y9m.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (5y9m.pdb2.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5Y9M
  • CSU: Contacts of Structural Units for 5Y9M
  • Structure Factors (1143 Kb)
  • Retrieve 5Y9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y9M from S2C, [Save to disk]
    • View 5Y9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y9M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y9m_X] [5y9m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y9M
  • Community annotation for 5Y9M at PDBWiki (http://pdbwiki.org)

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