5YA1		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ATP, HEZ, PO4	enzyme
Gene Ontology	Chain Function Process Component A, B D, C enzyme activator activity
Primary reference	Evidence of link between quorum sensing and sugar metabolism in Escherichia coli revealed via cocrystal structures of LsrK and HPr., Ha JH, Hauk P, Cho K, Eo Y, Ma X, Stephens K, Cha S, Jeong M, Suh JY, Sintim HO, Bentley WE, Ryu KS, Sci Adv. 2018 Jun 1;4(6):eaar7063. doi: 10.1126/sciadv.aar7063. eCollection 2018 , Jun. PMID:29868643

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (369 Kb) [Save to disk] Biological Unit Coordinates (5ya1.pdb1.gz) 182 Kb Biological Unit Coordinates (5ya1.pdb2.gz) 183 Kb LPC: Ligand-Protein Contacts for 5YA1 CSU: Contacts of Structural Units for 5YA1 Structure Factors (395 Kb) Retrieve 5YA1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YA1 from S2C, [Save to disk]

View 5YA1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ya1_A] [5ya1_B] [5ya1_C] [5ya1_D] SWISS-PROT database:

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