5YAL Hydrolase date Sep 01, 2017
title Ferulic Acid Esterase From Streptomyces Cinnamoneus At 1.5 A Resolution
authors H.Tamura, M.Uraji, E.Mizohata, K.Ogawa, T.Inoue, T.Hatanaka
compound source
Molecule: Esterase
Chain: A
Fragment: Unp Residues 42-383
Ec: 3.1.1.73
Engineered: Yes
Mutation: Yes
Organism_scientific: Streptomyces Cinnamoneus
Organism_taxid: 53446
Gene: Esta
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.900 70.850 87.170 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACT, GOL, NA enzyme Hydrolase E.C.3.1.1.73 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLoop of Streptomyces feruloyl esterase plays an important role in its activity of releasing ferulic acid from biomass., Uraji M, Tamura H, Mizohata E, Arima J, Wan K, Ogawa K, Inoue T, Hatanaka T, Appl Environ Microbiol. 2017 Nov 17. pii: AEM.02300-17. doi:, 10.1128/AEM.02300-17. PMID:29150515
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (5yal.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 5YAL
  • CSU: Contacts of Structural Units for 5YAL
  • Structure Factors (1189 Kb)
  • Retrieve 5YAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YAL from S2C, [Save to disk]
  • View 5YAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YAL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yal_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YAL
  • Community annotation for 5YAL at PDBWiki (http://pdbwiki.org)

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